PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G040300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

M-type_MADS

Protein Properties

Length: 151aa MW: 16986.8 Da PI: 11.6442

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G040300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.9	1.7e-25	96	145	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqv fskRr+g++KKA+EL LCdaeva+++fs+ g+lyeyss Brast01G040300.1.p 96 RIEDRTSRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGRLYEYSS 145 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-32	87	146	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.114	87	147	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.49E-33	88	147	No hit	No description
PRINTS	PR00404	7.0E-27	89	109	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-25	89	147	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-25	96	143	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-27	109	124	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-27	124	145	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MAMFQIPRVK KSFCSIENLI GKKTDFLLEL GGPPRSAPRP SLLSDPLARP TLRWSAPFLL 60 SSLACHARVR EGERRSSDGG RRCVRMARRG RVELRRIEDR TSRQVRFSKR RAGLFKKAFE 120 LALLCDAEVA LLVFSPAGRL YEYSSSSRCS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
1tqe_R	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
1tqe_S	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_A	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_B	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_C	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_D	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_E	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B
6c9l_F	2e-16	89	147	3	61	Myocyte-specific enhancer factor 2B

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G040300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF469334	2e-85	KF469334.1 Brachypodium distachyon MADS-box transcription factor 40 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	4e-24	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Brast01G040300.1.p