PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G054000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 578aa    MW: 64379.9 Da    PI: 5.1121
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G054000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like802.7e-25194247155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+g+t+e+v+SHLQkYRl
  Brast01G054000.1.p 194 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGITRENVASHLQKYRL 247
                         68*******************.9*******************************8 PP
2Response_reg81.23.5e-27141221109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge + + + 
  Brast01G054000.1.p  14 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEILRERKskFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKG 102
                         89*********************.***************888778**********************6654.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  Brast01G054000.1.p 103 VQHGACDYLLKPVRMKELRN 122
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1682572IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-3511135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.6E-4411150No hitNo description
SMARTSM004487.3E-3212124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.76213128IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.3E-2414123IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.00E-2915127No hitNo description
SuperFamilySSF466891.88E-17191250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-27192251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-22194247IPR006447Myb domain, plants
PfamPF002494.5E-7196246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAADATVFPY GLRVLVVDDD PTWLKILEKM LRKCSYEVTT CGLARVALEI LRERKSKFDI  60
VISDVNMPDM DGFKLLEHIG LEMDLPVIMM SIDGETSRVM KGVQHGACDY LLKPVRMKEL  120
RNIWQHVYRK RMHEVKEIEG HDSCDDLQIL RYGFEGFDEK GIFITADSDT NRKRKDVDKD  180
HADQDSSDGA TAKKARVVWS VDLHQKFVNA VNQIGFDKVG PKKILDLMNV PGITRENVAS  240
HLQKYRLYLG RLQKQNEERI LGAARQDFSN KGTSENLNLR SSFQDQPSNV SSGYPHASQK  300
IQGQSSMLDS QLEDTKCTVP LPASDKSRNS VNDVADSQNV AGASPLSGVL SFKGLPVNQD  360
RKPSETMIME CQTWNGGVPS KQFMQYPKHN HARCDLLGDY ACLPKPDLEH PAAPGRFFTP  420
PPLISMSCSM ELDARNFSDV KPALLDCIKS LSPALTCTVD SVSVQLSDSV VTSTSSDRKF  480
STVEGLPYFD QTTNQGPLFR SQEPSTICGA DLASLPEDLP SYPLQGVSFE NIGLSSIDLF  540
HYNDTMLLAG LQSNWYDDQE FISETTDYPL MDGCLFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17193252463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G054000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564868.10.0two-component response regulator ORR26 isoform X1
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLI1HUC70.0I1HUC7_BRADI; Two-component response regulator
STRINGBRADI2G58020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]