PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G064700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 189aa    MW: 20139.7 Da    PI: 8.7051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G064700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-1666114355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         ykGVr+++ +g+Wv+eIr+p   g r r +lg++ t++ Aa a++aa   l+g
  Brast01G064700.1.p  66 YKGVRRRR-WGKWVSEIRVP---GSRERLWLGSYATPQAAAVAHDAAVFFLRG 114
                         9****777.**********8...435***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.57E-1565126No hitNo description
SMARTSM003801.1E-2565131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2565126IPR001471AP2/ERF domain
PROSITE profilePS5103220.46865125IPR001471AP2/ERF domain
PfamPF008473.2E-966114IPR001471AP2/ERF domain
PRINTSPR003678.2E-86677IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1666125IPR016177DNA-binding domain
PRINTSPR003678.2E-888104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQVNSSCVVD LPHPIYTRRT EVTGSELSSV AVVRTLFAMS RADEAAAARG AGKGEGEEEE  60
GCRYNYKGVR RRRWGKWVSE IRVPGSRERL WLGSYATPQA AAVAHDAAVF FLRGAGPDAA  120
ALNFPERAAA AYGAVGAARL SPRSVQRVAS DAGMAADAQL VEAREQQQRR LASSGEISVS  180
VDGMEILM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G064700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276762e-95KJ727676.1 Zea mays clone pUT5603 AP2-EREBP transcription factor (EREB63) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567341.12e-59ethylene-responsive transcription factor ERF096
TrEMBLA0A0Q3KIG94e-58A0A0Q3KIG9_BRADI; Uncharacterized protein
STRINGBRADI2G57200.13e-54(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.16e-25ERF family protein