PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G080300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 178aa    MW: 19899.1 Da    PI: 9.531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G080300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071660345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        +W++ Ed+ +  a  +++ +   +W+++a++++ gRt+ +  +++q
  Brast01G080300.1.p 16 PWSKAEDKAFESALVLFPEHtpgRWERVAARVP-GRTPREAWEHYQ 60
                        8*****************99999**********.***988777776 PP
2Myb_DNA-binding47.34.7e-15110154347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +W++eE++l++d+ +++G g+W+ I+r    +Rt+ q+ s+ qky
  Brast01G080300.1.p 110 PWSEEEHKLFLDGLEKYGRGDWRNISRFAVRTRTPTQVASHAQKY 154
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.171967IPR017930Myb domain
SuperFamilySSF466891.09E-111162IPR009057Homeodomain-like
SMARTSM007173.7E-41365IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-61561IPR009057Homeodomain-like
PfamPF002492.0E-61659IPR001005SANT/Myb domain
CDDcd001671.39E-51654No hitNo description
PROSITE profilePS5129418.225103159IPR017930Myb domain
SuperFamilySSF466892.73E-17105160IPR009057Homeodomain-like
SMARTSM007175.6E-11107157IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.7E-16108158IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-11110153IPR009057Homeodomain-like
PfamPF002491.3E-12110154IPR001005SANT/Myb domain
CDDcd001671.09E-10110155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDSSCYSSHQ AAWGRPWSKA EDKAFESALV LFPEHTPGRW ERVAARVPGR TPREAWEHYQ  60
ALVADVDLIE RGAVDAPACW NDDGGTADAA AAARRAAGKA RGEERRRGIP WSEEEHKLFL  120
DGLEKYGRGD WRNISRFAVR TRTPTQVASH AQKYFIRQAN AATRDSKRKS IHDITTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-161477871RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G080300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567296.11e-104transcription factor DIVARICATA
SwissprotQ8S9H72e-53DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0Q3IYG41e-103A0A0Q3IYG4_BRADI; Uncharacterized protein
STRINGEMT139745e-89(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-47MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]