PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G080400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 252aa MW: 27756.9 Da PI: 5.67

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G080400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.4	4.6e-43	8	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+L + +e + w++F+ r++++a+g r++r+t sgyWka Brast01G080400.1.p 8 LPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLSEiharlcGGGSEGEPWFYFCARQEREARGGRPSRTTPSGYWKA 98 79**************************99***********8445655422336679************************ PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+ +++ +g++kt+vfy+grap+g+kt+W m+eyr+ Brast01G080400.1.p 99 AGTPGVVYPVsGRRPIGMRKTMVFYRGRAPSGTKTKWKMNEYRA 142 *9998757888*************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-48	3	179	IPR003441	NAC domain
PROSITE profile	PS51005	47.918	8	179	IPR003441	NAC domain
Pfam	PF02365	1.2E-23	9	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MMADGVQLPP GYRFYPTEEE LICFYLRNKL DSRRDDIERV IPVVDVYSVD PWQLSEIHAR 60 LCGGGSEGEP WFYFCARQER EARGGRPSRT TPSGYWKAAG TPGVVYPVSG RRPIGMRKTM 120 VFYRGRAPSG TKTKWKMNEY RALQHHHEED DAHARAGAPA VAPASQLRSE FSLCRLYTKS 180 GTLRQFDRRP LAAAADNPGP STAAAVSPDD DDGSGGSMQP HEEAELMEGG GGDPYGDDVA 240 TLAALLYWPE D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-30	6	185	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-30	6	185	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-30	6	185	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-30	6	185	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-30	6	185	15	171	NAC domain-containing protein 19
4dul_B	7e-30	6	185	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G080400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	1e-140	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567294.1	1e-145	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-61	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	I1HTN2	1e-144	I1HTN2_BRADI; Uncharacterized protein
STRING	BRADI2G55780.1	1e-144	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	7e-63	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Brast01G080400.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]