PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G082400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 544aa    MW: 59827.2 Da    PI: 7.2392
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G082400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10232262434
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                         +k err+++NReAA++sR+RKka++++Le+ 
  Brast01G082400.1.p 232 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 262
                         799*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.5E-8229305IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.289231275IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7232276No hitNo description
Gene3DG3DSA:1.20.5.1701.8E-7233277No hitNo description
PfamPF001701.9E-7233267IPR004827Basic-leucine zipper domain
PROSITE patternPS000360236251IPR004827Basic-leucine zipper domain
PfamPF141447.6E-29314388IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MVQGEESSWR MASAHDHERA AVHLNQAAAA LPYHGGVQAH ASAAPPASFL DFQPAAAAAA  60
YFGELEEALI HGANAGHHPG SMITSDMHSA KSAAAGYLAA RPPTLEIFPS WPMRHQQQLH  120
SGNSQQSVGS TTDSSSARNT MAQMELVSPG PASSIRPSPR SSSEQQQQRQ EVMMVTTDDY  180
SYKPAFAPPP ATLAAAPSFQ QQQQLLQLPL HGGDHDKRKH GFARKDGKSV DSKTERRLAQ  240
NREAAKKSRL RKKAYVQNLE TSRVRLQQME QELQRARSQG MFLGGCSGSG DLSSGAALFD  300
MEYARWLDDD GKRLAELRGA LQAHLVDGNL GLIVEECMRH YDELFGLKEE LARSDVFHLL  360
TGAWATPAER CFFWIGGFRP SDILKMLIQQ LDPLTEQQLM GIYGLKQSSE QAEEALAQGL  420
QQLHQSLADT VAAGTLNEGA AVPNYMGLMA IALEKLASLE SFYQQADNLR KQTLHQMRRI  480
LTTRQAARCF LSIGEYYRRL RALSNLWASR PRENFIGTDS LSPTGTELQG LHHQPQQNQF  540
SGF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G082400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663980.0AK366398.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754949.10.0transcription factor LG2 isoform X1
RefseqXP_014754950.10.0transcription factor LG2 isoform X1
RefseqXP_014754951.10.0transcription factor LG2 isoform X1
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLI1HTK90.0I1HTK9_BRADI; Uncharacterized protein
STRINGBRADI2G55567.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38093166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-118bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]