PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G091100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 208aa    MW: 22401.2 Da    PI: 6.2467
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G091100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.32e-29100153155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++Wt+eLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl
  Brast01G091100.1.p 100 KARMVWTTELHRRFVEAVAHL-GEKGAVPKAIVQLMNVDGLTRENVASHLQKYRL 153
                         68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1897156IPR017930Myb domain
SuperFamilySSF466897.53E-2098157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-2999158IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-25100153IPR006447Myb domain, plants
PfamPF002499.4E-10102152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MLSPRVVRPQ PHAAASEWEL GLPSAAELTP VSQPLIPPAL AAAFGIDTAG PVPSSVDARL  60
LQDSPTSHLS SRFDEYDEED EEGEGETEGA ATGGGRSGKK ARMVWTTELH RRFVEAVAHL  120
GEKGAVPKAI VQLMNVDGLT RENVASHLQK YRLYLKRLHI GGAAATPPPQ VPPPPPYYSR  180
FDAKPPQDTM NRNGVRTFIS YEKLGCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-26100156157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Binds to specific sites on CCA1 promoter leading to CCA1 activation (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G091100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16164597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-115HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567265.22e-93transcription factor PCL1
SwissprotQ94DH32e-36PCL1_ORYSJ; Transcription factor PCL1
TrEMBLA0A0Q3GJF84e-92A0A0Q3GJF8_BRADI; Uncharacterized protein
STRINGBRADI2G54787.14e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-29G2-like family protein