PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G091900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 342aa    MW: 36036.7 Da    PI: 6.4389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G091900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.22.5e-31145201258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                          Dgy+WrKYGqK++k++++prsYY+Cts++C +kk+ve+s++dp+++++tYeg H h
  Brast01G091900.1.p 145 TDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCGAKKHVEKSTHDPEMLIVTYEGLHLH 201
                         6******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.737139204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-30141202IPR003657WRKY domain
SuperFamilySSF1182903.79E-26142203IPR003657WRKY domain
SMARTSM007742.0E-35144203IPR003657WRKY domain
PfamPF031062.0E-25146201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGDVLQAQAV APAADEAGIW PGELDEQLIS DLLSDDSLLA SLVDPADDSE HYCSTGSAGA  60
AAAPCDTAAE HERVPAAAAS RALCSAYSGP TITDVQKALS SRPHPSRSGR RYSSLYFRRY  120
GAPSAAPESS RHTATVRSCG GKMPTDGYKW RKYGQKSIKN NPHPRSYYKC TSSRCGAKKH  180
VEKSTHDPEM LIVTYEGLHL HGPQPLSRHL QPAPPAPAIC EQEAMANKKA RLSPTTSDDN  240
RGDDDSGAGI IACGARPSKE TCGVDDDDVR GSSKLQGRQK GRAHDAVIAV DSCDGRSAAS  300
SAPAHADDAA AAVFSSDSPP AANWSCLDSP WSPESHFPWT I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-211462011974Probable WRKY transcription factor 4
2lex_A7e-211462011974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G091900.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753904.11e-171probable WRKY transcription factor 20 isoform X1
TrEMBLA0A0Q3GJF31e-170A0A0Q3GJF3_BRADI; Uncharacterized protein
STRINGBRADI2G54720.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-24WRKY DNA-binding protein 49