PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G094500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 197aa    MW: 21453.8 Da    PI: 6.4162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G094500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00126082123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C+k+F++   L  H  +H
  Brast01G094500.1.p 60 FECKTCSKRFPSFQALGGHRTSH 82
                        89**********99998888777 PP
2zf-C2H211.80.00072112134123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C  Cg  Fs    L  H+r+H
  Brast01G094500.1.p 112 HECAVCGLEFSMGQALGGHMRRH 134
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-65784No hitNo description
PfamPF139124.5E-125982IPR007087Zinc finger, C2H2
SMARTSM003550.186082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4296087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-6110139No hitNo description
Gene3DG3DSA:3.30.160.604.7E-4110137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-11111136IPR007087Zinc finger, C2H2
SMARTSM003550.89112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MTLTREEAQE SKEMDQSLRV HADALLSLSS PAAGEITTSH KPPTTTTPAG RRALAAEGVF  60
ECKTCSKRFP SFQALGGHRT SHTRLQARIL LQQQQQHDQD QEQQERDRAR VHECAVCGLE  120
FSMGQALGGH MRRHRGEPAM ATTTAAPASG ETQQQPDVVM PDLNYPPMME DSGGGGRQDS  180
SASDRRSEHP LLDLLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G094500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-88HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567258.17e-92zinc finger protein ZAT11
TrEMBLI1HT802e-90I1HT80_BRADI; Uncharacterized protein
STRINGBRADI2G54500.13e-91(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-19C2H2 family protein