PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G102300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 560aa    MW: 59786.1 Da    PI: 6.889
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G102300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.22.9e-32224280259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkve+s  +++++ei+Y+g+Hnh 
  Brast01G102300.1.p 224 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVETSL-EGQITEIVYKGTHNHA 280
                         8****************************************.***************7 PP
2WRKY106.61.3e-33383441159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  Brast01G102300.1.p 383 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASQDLRAVITTYEGKHNHD 441
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-28214282IPR003657WRKY domain
PROSITE profilePS5081122.171218282IPR003657WRKY domain
SuperFamilySSF1182902.62E-24219282IPR003657WRKY domain
SMARTSM007745.2E-34223281IPR003657WRKY domain
PfamPF031063.5E-24224279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.48E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.446378443IPR003657WRKY domain
SMARTSM007741.3E-38383442IPR003657WRKY domain
PfamPF031066.0E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MTTSSSGSIE TSANSRPGSF SFANASFTDI LGGSAGGGGA SGGYKAMTPP SLPLSPSLMS  60
PSSYFNMPAG MNLADFLDSP VLLTSSIFPS PTTGAFASQQ FNWRPEASAE QDGKDEQRQS  120
AYSDFSFQTA LQGNNEEAAR TMTTTTTFQP SAPLAPQQGE EAYRGQQQQQ QPWAGYQQPA  180
AMEASANNPA SFSAAPLQAT SAEMAPHAQG GVYRQSHSQR RSSDDGYNWR KYGQKQVKGS  240
ENPRSYYKCT FPSCPTKKKV ETSLEGQITE IVYKGTHNHA KPPNTRRGSG AQVLQSDASE  300
HSFGGVSGGG AHVTTPENSS ASFGDDEVGG AGSPRAANEL DDDEPDSKRW RKDGDGEGIG  360
VGGNRTVREP RVVVQTMSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT TAGCPVRKHV  420
ERASQDLRAV ITTYEGKHNH DVPAARGSAA LYRPAPRPDM AAASGHFMAN NQPPAMAYQQ  480
TAVNAGTQYA PRPDGFGGGG QSQGSFGFGG GFGFSGFDNP AGSYMSQHQQ QQRHNDALHA  540
SGAKEEPRED MFFQHPPQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36215444878Probable WRKY transcription factor 4
2lex_A2e-36215444878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G102300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564512.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLI1HSZ20.0I1HSZ2_BRADI; Uncharacterized protein
STRINGBRADI2G53760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.16e-97WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]