PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 229aa    MW: 25459.1 Da    PI: 7.8506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.53e-09861371459
                         --TT-SS-EEEEEE-ST...T---EEEEEE-S...SSTTEEEEEEES--SS- CS
                WRKY  14 evkgsefprsYYrCtsa...gCpvkkkversa...edpkvveitYegeHnhe 59 
                         +  + +  r YY+C ++   gC++kk+v++++   +   ++ itY +eH+++
  Brast01G105300.1.p  86 TSAKDKRIRYYYKCMYSnerGCRAKKQVQQQDsssDHRPMFLITYVNEHTCQ 137
                         555677889*****9988889*******986511134569**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508118.69668134IPR003657WRKY domain
SuperFamilySSF1182903.92E-1081137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-1183138IPR003657WRKY domain
PfamPF031061.4E-1183137IPR003657WRKY domain
SMARTSM007747.9E-788138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MALGKDAVEQ LLQELEGGYN LNASLLELLS RPLDWRGQKM AVEMIRELSQ VLKVSLFMLK  60
AGDSSTVRES RTTPEATTYG DIGKRTSAKD KRIRYYYKCM YSNERGCRAK KQVQQQDSSS  120
DHRPMFLITY VNEHTCQQLL PKENIITTNT RTRNDHIDPP QRVGSGAELE NKIMAKCLAN  180
VIGGAAAPPS SSSTSSMPPP IEENMGEMME IYSYFLCGPP FPPASAWA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314630.11e-121probable WRKY transcription factor 70
TrEMBLA0A0Q3N1A41e-129A0A0Q3N1A4_BRADI; Uncharacterized protein
STRINGBRADI2G53500.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01900.11e-06WRKY DNA-binding protein 62