PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 374aa    MW: 40434.2 Da    PI: 4.6775
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.31.3e-07851411159
                         EEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSS.....TTEEEEEEES--SS- CS
                WRKY  11 GqKevkgsefprsYYrCtsa...gCpvkkkversaed.....pkvveitYegeHnhe 59 
                         G+++ ++ +    YY+C ++   gC++kk+v+r+++        +++itY +eH+++
  Brast01G105400.1.p  85 GRRSLTKDKRIWYYYKCMFShqrGCRAKKRVQRQDSSsgaegRPTFQITYVNEHTCQ 141
                         6666667777778****876668**********9754111114589********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-784141IPR003657WRKY domain
PfamPF031064.2E-984141IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-885141IPR003657WRKY domain
SMARTSM007742.7E-590142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MALGQLEAVE QLRQEINGGQ ELSGRLWELL SQPLDSGGRE AALEMIKQIS RVFMVTQLML  60
KPGDSSRAGE ARMVAPEVTT ERSIGRRSLT KDKRIWYYYK CMFSHQRGCR AKKRVQRQDS  120
SSGAEGRPTF QITYVNEHTC QGVLLPDENT IPATNNTPTR NAGYAGSSFA PPDHVAEFDN  180
DALVSCLAMV LSGAGAAAPS SSSSSFLPPP RHVQASMCGP ASSYGRHSST SLLEDLSMGL  240
DDEMATEKEA SFFSCGSPFP FTAPIAEEAA PSSLPSPAEA IWSDPAAYDV AAGGEYWPSL  300
DQMAEMNFSC RTLFPPVEEA RFMGYPDGMS RGSWTQVHQE QPGLPSDQLP PAASSSSLSS  360
VAWPVFDVDQ RWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233535.10.0uncharacterized protein LOC104583343
TrEMBLA0A0Q3GIY30.0A0A0Q3GIY3_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-07WRKY family protein