PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G105600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 265aa    MW: 28776.3 Da    PI: 6.7275
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G105600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.83e-2554115259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+++g+ fpr YYrCt++   gCp+ k+ve+s+ edp ++ ++Y+++H+++
  Brast01G105600.1.p  54 HDGFQWRKYGQKMIRGNAFPRCYYRCTYHqdhGCPASKHVEQSNsEDPPLFRVIYTNDHTCS 115
                         7***************************98999********985379*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2538115IPR003657WRKY domain
SuperFamilySSF1182904.71E-2346115IPR003657WRKY domain
SMARTSM007741.9E-3653116IPR003657WRKY domain
PROSITE profilePS5081119.58955112IPR003657WRKY domain
PfamPF031063.9E-2555114IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAKSGGDDTV SSSGCSNGTN KRPLQDNVGG HAQEHAKKKT RVGMRTDYTY APYHDGFQWR  60
KYGQKMIRGN AFPRCYYRCT YHQDHGCPAS KHVEQSNSED PPLFRVIYTN DHTCSGASEH  120
CYMASSMQIQ QIADASLRKP ATERMEIAPA AAPLARRGRA AAYAAAIKEE KDAIVSSLLT  180
VIRGCEVDVV KSEAVHENLY GAGACMLSPA AVAVHEGSGS SLVSPVALTA PDDMGLDFMV  240
ESLEPRWFEP LDLGWFVEST HSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-1240112169WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G105600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063913e-86JQ806391.1 Hordeum vulgare WRKY transcript factor 53 (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233534.11e-137probable WRKY transcription factor 38 isoform X1
TrEMBLA0A0Q3RB801e-136A0A0Q3RB80_BRADI; Uncharacterized protein
STRINGTRIUR3_27575-P11e-107(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-19WRKY DNA-binding protein 55