PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G106700.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WOX

Protein Properties

Length: 272aa MW: 30403.9 Da PI: 6.5151

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G106700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Brast01G106700.1.p 91 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	103.1	1.9e-33	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Brast01G106700.1.p 90 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	85	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.819	87	152	IPR001356	Homeobox domain
SMART	SM00389	5.3E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-18	90	154	IPR009057	Homeodomain-like
Pfam	PF00046	4.1E-19	91	151	IPR001356	Homeobox domain
CDD	cd00086	2.35E-13	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MEWDKATAAT LAGEQVGERG GVEALGYVKV MTDEQMEVLR KQISIYATIC EQLVEMHRAL 60 TAHQDSIAGM RLGNLYCDPL MVHGGHKITA RQRWTPTQMQ LQILESIFDQ GNGTPSKQKI 120 KDITAELSQH GQISETNVYN WFQNRRARSK RKQAASLPNN AESEAEADEE SPTEKKPKSD 180 GPLHQNLATR AHNPERISEM HRHLDMEHEQ NRGMMYGSNS DNSSKSSGGL GQMSFYANVM 240 SNPRIDQFLG KVETPGSFSQ FRPGESFDMY G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G106700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003564486.1	1e-177	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-144	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2K2DFQ6	1e-176	A0A2K2DFQ6_BRADI; Uncharacterized protein
STRING	BRADI2G53390.1	1e-176	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-63	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Brast01G106700.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]