PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G110500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 373aa    MW: 40849.8 Da    PI: 8.6821
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G110500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.2e-1168120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++g+++A+++d    + +r +r + g++ t+e Aa+ ++ a++k++g
  Brast01G110500.1.p  68 SVYRGVSRHRSSGKYEAHLWD----KrVRdRRGRQGSYHTEEAAARTYDLAALKYWG 120
                         78*******************....3334688888********************98 PP
2AP250.26.4e-16164215155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV  ++++grW+A+I       g +k+ +lg+fgt eeAa+a++ a+ + +g
  Brast01G110500.1.p 164 SKYRGVAKHHQNGRWEARIGYaS---G-KKYLYLGTFGTQEEAARAYDLAAIQRRG 215
                         89****************76633...3.6*********************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.81E-1468131IPR016177DNA-binding domain
CDDcd000185.55E-1368130No hitNo description
PfamPF008471.5E-868120IPR001471AP2/ERF domain
PROSITE profilePS5103218.6569129IPR001471AP2/ERF domain
SMARTSM003802.0E-1369135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-1469130IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17164224IPR016177DNA-binding domain
PfamPF008477.0E-12164215IPR001471AP2/ERF domain
CDDcd000187.34E-21164224No hitNo description
SMARTSM003801.3E-24165229IPR001471AP2/ERF domain
PROSITE profilePS5103217.675165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-17165223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MTANKKPRCA CGGVAAPTTP LSPVSSSASS WGSRIVPSSR PARSHKKNKA RARSGIGDAV  60
LVPMRGSSVY RGVSRHRSSG KYEAHLWDKR VRDRRGRQGS YHTEEAAART YDLAALKYWG  120
SDCVLLNFPV ETYKQECERM QHMTREEYIA SLRRMSSGFT KGVSKYRGVA KHHQNGRWEA  180
RIGYASGKKY LYLGTFGTQE EAARAYDLAA IQRRGLGAVT NFDVRCYTDE HLRVQPLPRC  240
SGKAEPDPEP EPEPAAAARP CPAPLQPKME PGLDVVEPAA PALRGDTDED EDVDRAIAEV  300
LRALCVDRAD FEARYPPRRA GAASAIWPDD VRDLPGHAGF EDDIESALFA DAADVQAAAW  360
LSSASKYNSE LA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G110500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754135.10.0AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ6PQQ37e-67AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2K2DFL71e-135A0A2K2DFL7_BRADI; Uncharacterized protein
STRINGBRADI2G53070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.38e-69AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]