PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G111300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 179aa    MW: 20246.7 Da    PI: 8.9249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G111300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.41.9e-29301633127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek...ewyfFskrdkkyatgkrknratk.sgyWkatgkd 89 
                         pG+rF P+d+el+v+yL++k+++++l++ ++++ +d+y  +P+dL  + k +e+   +wy F +r++ky++gkr++r t  +g+Wkatgk+
  Brast01G111300.1.p  30 PGVRFVPSDDELIVHYLHRKLQDRPLPI-DIVHVADVYAEHPKDLSVTSKLGESlegSWYVFPERNRKYPKGKRPSRNTGtAGRWKATGKE 119
                         9***************************.889999**********8543433334469*******************66549********* PP

                 NAM  90 kevlsk....kgelvglkktLvfy.........kgrapkgektdWvmheyr 127
                         +e+l++            + +v           + +++ ++kt+W m e+ 
  Brast01G111300.1.p 120 EEILATrvlaY-------EEFVHDgldtsgsksRYSKRPTKKTEWKMSEFV 163
                         ****9544330.......33333333333333233455557********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100530.59728179IPR003441NAC domain
SuperFamilySSF1019411.7E-3029169IPR003441NAC domain
PfamPF023654.2E-1530162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MSEPTSSTPQ QQTREAAAPA PYNVDCLRIP GVRFVPSDDE LIVHYLHRKL QDRPLPIDIV  60
HVADVYAEHP KDLSVTSKLG ESLEGSWYVF PERNRKYPKG KRPSRNTGTA GRWKATGKEE  120
EILATRVLAY EEFVHDGLDT SGSKSRYSKR PTKKTEWKMS EFVSTNSDRP IGSEANTML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-183012217105Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G111300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639570.17e-37protein ATAF2
TrEMBLA0A077RW961e-42A0A077RW96_WHEAT; Uncharacterized protein
TrEMBLA0A446Q2T51e-42A0A446Q2T5_TRITD; Uncharacterized protein
STRINGEMT145692e-41(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-26NAC domain containing protein 47