PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G112800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 475aa    MW: 51893.2 Da    PI: 6.7331
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G112800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.73.3e-10187229345
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                         + k  rr+++NReAAr+sR+RKka+i++Le+   +L++  ++L
  Brast01G112800.1.p 187 DHKSLRRLAQNREAARKSRLRKKAYIQNLETSRLKLTQLEQEL 229
                         56889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.4E-8178232No hitNo description
SMARTSM003387.3E-10185248IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128187231IPR004827Basic-leucine zipper domain
PfamPF001702.4E-7188229IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.98E-7189232No hitNo description
CDDcd147083.91E-22189241No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141442.8E-31271346IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MEIRRGGGPA AAAAEDARGP MPGFGAPQHT IPTDVNIMQT SRVTDFGVLA QSAGFRIEDL  60
ANLSANTLFS LKPKNHTFVS DPLQFGNYGK SISPADLATT AAAAAAITTV DPQALLQQKG  120
VQSNIVAVRT RNSENWGESS MADTSPRTDT STDPDIDVDE RNQMFEQGQL AAPTASDSSD  180
KSRDQTDHKS LRRLAQNREA ARKSRLRKKA YIQNLETSRL KLTQLEQELQ RARQQGIFIS  240
SSGDQSHSTS GNGALAFDME YARWLEEHNK HINELRAGIN AHAGDDDLRS IVDSIMAQYD  300
EFFRLKGVAA KADVFHVLSG MWKTPAERCF MWLGGFRSSE LLKLLAGQLE PLTEQQLTGI  360
CNLQQSSQQA EDALSQGMEA LQQSLAETLA SGSLGPAGSS SNVANYMGQM AMAMGKLGTL  420
ENFLRQADNL RLQTLQQMQR ILTTRQSARA LLAISDYFSR LRALSSLWLA RPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G112800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629930.0AK362993.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2012B20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564436.10.0transcription factor HBP-1b(c1)
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLI1HSM80.0I1HSM8_BRADI; Uncharacterized protein
STRINGBRADI2G52860.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-139bZIP family protein