PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G118200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 178aa    MW: 19270 Da    PI: 10.7749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G118200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-192676256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Brast01G118200.1.p 26 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 76
                        7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.94E-312585No hitNo description
PfamPF008471.1E-122675IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-312684IPR001471AP2/ERF domain
SMARTSM003806.6E-342689IPR001471AP2/ERF domain
PROSITE profilePS5103221.9442683IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-222684IPR016177DNA-binding domain
PRINTSPR003674.3E-102738IPR001471AP2/ERF domain
PRINTSPR003674.3E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDPMVRGVAS LGGGGGAMRG EGEEAHYRGV RKRPWGRYAA EIRDPWKKTR VWLGTFDTPV  60
EAALAYDRAA RTLRGAKAKT NFPDHHQLLH VPHRRLLAPL QQRHHNPAVP FGGIDLNFPS  120
PWHFVYFSPL AAAPLPQAAS TPAVSAPPST TLQLGMGSRP GSLPFDLNEP PSLLFGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212683563ATERF1
3gcc_A4e-212683563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G118200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0946504e-87FP094650.1 Phyllostachys edulis cDNA clone: bphylf047i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567200.29e-92ethylene-responsive transcription factor 12
TrEMBLA0A0Q3GGF12e-90A0A0Q3GGF1_BRADI; Uncharacterized protein
STRINGBRADI2G52380.11e-88(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-33ERF domain protein 12