PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G130400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 242aa MW: 25828.2 Da PI: 8.0094

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G130400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116	2.3e-36	49	154	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrr+Ca++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q Brast01G130400.1.p 49 PCGACKFLRRRCAPGCVFAPHFsggggRERGAAQFAAVHRVFGASNVAKLLSRVPVPLRRDTARTVCYEAQARIADPVYGCVGTILALQHQ 139 7*******************8887444559******************************************************* PP DUF260 87 leqlkaelallkeel 101 ++ l+ +l+ l+++l Brast01G130400.1.p 140 VALLQGQLSILQSQL 154 *******999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.875	48	154	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-39	49	151	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MQGGPGQPPC RKRGGAVAVT RPAVCAVPPG QQQRAEVEEE ASSAGPGAPC GACKFLRRRC 60 APGCVFAPHF SGGGGRERGA AQFAAVHRVF GASNVAKLLS RVPVPLRRDT ARTVCYEAQA 120 RIADPVYGCV GTILALQHQV ALLQGQLSIL QSQLFNYRLA FASTHPDAHH FAALQPAYSA 180 ASAPSQMVNY DELPQAVDYM DVEPQMRGLE SLQLSQPPHR EENESQDMSP FSDNVGQQRQ 240 P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	42	157	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	42	157	4	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G130400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567161.1	1e-137	LOB domain-containing protein 20
Refseq	XP_024315860.1	1e-137	LOB domain-containing protein 20
Refseq	XP_024315861.1	1e-137	LOB domain-containing protein 20
TrEMBL	I1HS39	1e-135	I1HS39_BRADI; Uncharacterized protein
STRING	BRADI2G51310.1	1e-136	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	2e-38	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Brast01G130400.1.p