PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G142400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 462aa    MW: 49374.1 Da    PI: 7.6869
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.61.1e-34136251189
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasns 85 
                         aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++       +  +++++++e+++ s+s  
  Brast01G142400.1.p 136 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRpdqeglP--APEQTSTEQQVTSTS-- 222
                         689**************************************************************6665441..222222222222222.. PP

                 TCP  86 ssg..........................k 89 
                         s                            +
  Brast01G142400.1.p 223 S-YgfgnnnnpgpggmtssflhslgggaaD 251
                         1.1222333446666654444444444331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-32138250IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615139197IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MRVVSRQRAT VERRNSGVDR AVLKLEEDKN QLSRGLDPWS NPTGTTSTLH YLLQEKERAA  60
QAQEQLQIYH HHQQQQAAAG SFSSYLQHQQ HRRHQQAAKG RSGDGSRSSG ESTPVAADAQ  120
LLAATAFGSG RIVRSAAGRK DRHSKVCTAR GLRDRRVRLA AHTAIRFYDV QDRLGYDRPS  180
KAVDWLIRNA KAAIEELPDR PDQEGLPAPE QTSTEQQVTS TSSYGFGNNN NPGPGGMTSS  240
FLHSLGGGAA DQVSDNVKSL FPSSSAANEE YGRGSPPDLL SRTTSSQPSP QELCLTLQSN  300
NQHNNIFSHD GHHGAVNNVI SSAGGVPGWP DHVQRMPPWQ HHAHASENNG AGEQGGRGDG  360
GGYMSFGMPP RQGALDQSGQ LFSSHGEPLQ SSGAGWAASA RAWLDPLAAI GHQPTALSGP  420
HLGLSHLVAG GGGFMGFLAP AAQRLHLQGD EEQGSEVMPR D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-19144198155Putative transcription factor PCF6
5zkt_B1e-19144198155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354361GGRGDGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G142400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594351e-108AK359435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1096P14.
GenBankAK3616751e-108AK361675.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146F05.
GenBankAK3617481e-108AK361748.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1148B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567128.10.0transcription factor PCF7
SwissprotQ8LT051e-136PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2K2DF040.0A0A2K2DF04_BRADI; Uncharacterized protein
STRINGPavir.Eb03208.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-34TCP family protein