PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G155400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 249aa    MW: 27144.8 Da    PI: 8.2279
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G155400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1011.1e-31221142103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k++++++d++++ +++w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ ++         weF+h+sF +g+ +
  Brast01G155400.1.p  22 FVAKTFHMVSDPATDGVVRWGVASNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDS---------WEFAHESFLRGQAK 103
                         9********************999*****************************************998.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll  i rkk++
  Brast01G155400.1.p 104 LLPLIVRKKKK 114
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-3414105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-4718111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-2919111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2722111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-162245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-166072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-167385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGSECKGHQV QDDEGPGAIA PFVAKTFHMV SDPATDGVVR WGVASNTFLV LDPAAFSDFL  60
LPSYFKHRNF ASFVRQLNTY GFRKVDPDSW EFAHESFLRG QAKLLPLIVR KKKKAGGAAG  120
NRGELCEEEE EVRGTIRAVQ RLRDERKGME EELQAMDRRL RAAENRPGQM MAFLGKLADD  180
PGVVLRAMVA KKEELAAAGG KDSSSPEKRR RITGAEAEAG RGAVAGADDA AESRVVPFPF  240
SALGQVFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-251511113120Heat shock factor protein 1
5d5u_B3e-251511122129Heat shock factor protein 1
5d5v_B3e-251511122129Heat shock factor protein 1
5d5v_D3e-251511122129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G155400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3705380.0AK370538.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569736.11e-154heat stress transcription factor C-1b
SwissprotQ942D61e-134HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLI1HR891e-152I1HR89_BRADI; Uncharacterized protein
STRINGBRADI2G48990.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-58heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]