PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G159900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 397aa    MW: 43882.4 Da    PI: 10.4285
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G159900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.25e-2131131299
                         EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                         fkvl     + ++rl +p +f++++          ++k+++s+  tle +sgr+W v +  r++ +++++++GW +Fvk++ L+e Df+vF
  Brast01G159900.1.p  31 FKVL--IGDF-QKRLKIPPNFCKHIpweasrkakkSLKEASSMAATLEGPSGRTWPVVI--RRTAEGTFFASGWTKFVKDQALRELDFLVF 116
                         5555..3344.457********888*******99999999*******************..****************************** PP

                         EE-SSSEE..EEEEE-S CS
                  B3  83 kldgrsefelvvkvfrk 99 
                         ++dg  +f    +vf+k
  Brast01G159900.1.p 117 RHDGGARF--AAMVFDK 131
                         *8876555..7777776 PP
2B352.21.1e-16296382598
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         +++ +v  s ++++p  f ++h   ++e  ++ l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v+
  Brast01G159900.1.p 296 MSTMHVYYSFMMRFPTGFSRQHL--PRERAEMALRDPGGKAWAVLYI-PNTRDR--LSRGWCAFARGNCLEEGDCCVFELVGAAEF--RVH 379
                         6788999999*********9995..345569***************4.444455..9***********************997777..999 PP

                         EE- CS
                  B3  96 vfr 98 
                         +fr
  Brast01G159900.1.p 380 IFR 382
                         998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2025134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-2026134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.78827132IPR003340B3 DNA binding domain
CDDcd100175.37E-1928130No hitNo description
SMARTSM010192.6E-1230132IPR003340B3 DNA binding domain
PfamPF023625.2E-1830131IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-22284382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-23285382IPR015300DNA-binding pseudobarrel domain
CDDcd100173.40E-24290382No hitNo description
PROSITE profilePS5086313.789292384IPR003340B3 DNA binding domain
SMARTSM010192.5E-10292384IPR003340B3 DNA binding domain
PfamPF023621.3E-15294382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MRARVLLIEG SMPAAEGQSP WATGERRPHF FKVLIGDFQK RLKIPPNFCK HIPWEASRKA  60
KKSLKEASSM AATLEGPSGR TWPVVIRRTA EGTFFASGWT KFVKDQALRE LDFLVFRHDG  120
GARFAAMVFD KTACEREDLL RLGEDGPRKK RGRPRKASSR DGTVGKELVP YRGAGAPSDP  180
QPQVACSSST VELGSAGQSI AALKTEADTD ELPVIPSNPG PSQKRHGPDA EDGCPAKTRS  240
IQDDLAVAVA AGIPPSVRRY NGYVSRRRPV TGAERQRAME IAHSFRSSLP HCVIRMSTMH  300
VYYSFMMRFP TGFSRQHLPR ERAEMALRDP GGKAWAVLYI PNTRDRLSRG WCAFARGNCL  360
EEGDCCVFEL VGAAEFRVHI FRVVEPPVPA VRIRIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G159900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-99HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754273.10.0B3 domain-containing protein Os01g0723500
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A0Q3GE440.0A0A0Q3GE44_BRADI; Uncharacterized protein
STRINGBRADI2G48580.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127923135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-25B3 family protein