PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G163700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 303aa    MW: 33888.9 Da    PI: 7.0259
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G163700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.88.6e-1158150185
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrt....sessstcpyf 82 
                         +Wt++ + aL++a  e+    +r++l +  W evs  +     r  g+  s  qC+++++ l+k ++k+ke+++  +     +s s+++yf
  Brast01G163700.1.p  58 EWTEDSTFALLDAWGERFVCAGRRSLSADEWLEVSHLVaaaasRPAGY-YSEAQCRNRIDTLRKMFRKEKERSRLAAhrsnHPSPSSWVYF 147
                         5*************************************8886444444.4888******************9987531222556789**** PP

            trihelix  83 dql 85 
                         d++
  Brast01G163700.1.p 148 DKM 150
                         998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1457151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDDPAAASLS SSPSSSDASP SPRSKRRRTD RYALGFEFAP RLTPSAAAPA PASRSTPEWT  60
EDSTFALLDA WGERFVCAGR RSLSADEWLE VSHLVAAAAS RPAGYYSEAQ CRNRIDTLRK  120
MFRKEKERSR LAAHRSNHPS PSSWVYFDKM LSLMCPPPPP LLPRIVKRRR DRQPVPRHSW  180
GVDVGEFVLA GCGSAGSDAE LGGDQTYVTG AVKEEEYAVL TESIRRFGEV YERVESSKKQ  240
HMAQLKRMRR DMQRDLEVRW REILEKAEME IESIEEEEGN VKRLGDDDGC EKQNNGAVDA  300
SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RIVKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G163700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753725.11e-166trihelix transcription factor ASIL1
RefseqXP_014753726.11e-166trihelix transcription factor ASIL1
TrEMBLI1HR031e-165I1HR03_BRADI; Uncharacterized protein
STRINGBRADI2G48320.11e-166(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-27Trihelix family protein