PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G165800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 393aa    MW: 44377.7 Da    PI: 9.8226
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G165800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.2e-1568127155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n    k+ k+++lg ++ +e Aa a++ a++k++g
  Brast01G165800.1.p  68 SRFRGVSRHRWTGRFEAHLWDkNTWNPtqrKKgKQVYLGAYDEEEAAAMAYDLAALKYWG 127
                         789******************777755666447*************************98 PP
2AP250.93.9e-16170221155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t++eAa+a++ a+ +++g
  Brast01G165800.1.p 170 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTEQEAARAYDIAAIEYRG 221
                         89****99**********99966...3.6**********99*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-1668136IPR016177DNA-binding domain
PfamPF008473.1E-1268127IPR001471AP2/ERF domain
PROSITE profilePS5103219.34869135IPR001471AP2/ERF domain
SMARTSM003807.3E-2569141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1569136IPR001471AP2/ERF domain
PRINTSPR003675.0E-57081IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17170230IPR016177DNA-binding domain
CDDcd000183.58E-24170229No hitNo description
PfamPF008471.4E-11170221IPR001471AP2/ERF domain
PROSITE profilePS5103218.769171229IPR001471AP2/ERF domain
SMARTSM003801.2E-24171235IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-17171229IPR001471AP2/ERF domain
PRINTSPR003675.0E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MESTMIVKSE TNINPRLPPN TLTGASEVNH ASKIIKRRRR ETTSMATSRT NGSNLEKSTG  60
STTIKRSSRF RGVSRHRWTG RFEAHLWDKN TWNPTQRKKG KQVYLGAYDE EEAAAMAYDL  120
AALKYWGPTT YTNFPVMNYE KELKIMETLT KEEYLASLRR KSSGFSRGVS KYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTEQEAAR AYDIAAIEYR GINAVTNFDL RSYITWLKPS  240
VSDSPNVAGL AMPIPTENLF PRDTHIFSQH NPFILDHNTT QGSEEATISP NFPRTRASST  300
ALSLLFKSSM FRQLVEENSD ATNKIRGNVR EPVSKPEANE HHSFFHGGTP DVLCLFSPTG  360
VCNNSLELQE SIPYSGNHEI VTWNGLPSMP EQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193101PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G165800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808866.11e-152AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0Q3GDV90.0A0A0Q3GDV9_BRADI; Uncharacterized protein
STRINGBRADI2G48130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-80AP2 family protein