PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G170100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 473aa    MW: 50483.2 Da    PI: 8.9362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G170100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13330376455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Brast01G170100.1.p 330 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 376
                         799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-4643226IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-15329380No hitNo description
SuperFamilySSF474594.45E-16329380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-11330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-15332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MSWPETDAAL FAAVLGKDAA HHLATTPPHL DGPASASALS AELQARLQDL VERGGAWTYG  60
IFWQESHDGA GRPVLGWGDG HCREHDPAAA GEEEAGAADS RSLERKRVLL RLHALHGGGG  120
EDEEGADYAL RLDRVTGAEM YFLASMYFSF PVDACGPGRA LASGRHAWVA VEDPRPPGWC  180
VRASLARSAG LRTVVFLPCN GGVLELGSVA AIRENPDALL AIQSAFRVDP PAPVNDYMRI  240
FGKDLSRGAQ QTGRDATWKA RPLRLGGEAM AVTRRAPKKE VAKAKPAEPS PTKCVNFTKQ  300
PDAQKQAGGG ERRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPKISKMD  360
KASLLSDAIA YIQELEARLR GGPTPSSPSV EVKAMQDGVV LRVTTPLDAH PVSGALSAIR  420
DSHLSVVASD MAVAGDAVTH TLVVRSAGPD RLTAETVLAA MSRGMMSSTP SP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-24432299195Transcription factor MYC3
4rqw_B3e-24432299195Transcription factor MYC3
4rs9_A3e-24432299195Transcription factor MYC3
4yz6_A3e-24432299195Transcription factor MYC3
5gnj_A3e-25324379257Transcription factor MYC2
5gnj_B3e-25324379257Transcription factor MYC2
5gnj_E3e-25324379257Transcription factor MYC2
5gnj_F3e-25324379257Transcription factor MYC2
5gnj_G3e-25324379257Transcription factor MYC2
5gnj_I3e-25324379257Transcription factor MYC2
5gnj_M3e-25324379257Transcription factor MYC2
5gnj_N3e-25324379257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311319RRPRKRGRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G170100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569643.10.0transcription factor bHLH13
TrEMBLI1HQS80.0I1HQS8_BRADI; Uncharacterized protein
STRINGBRADI2G47730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.15e-55bHLH family protein