PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G176300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family RAV
Protein Properties Length: 374aa    MW: 39886 Da    PI: 9.9557
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G176300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.9e-1263111155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+ykGV   + +grW A+I++      r +r++lg+f  + +Aa+a++aa+++++g
  Brast01G176300.1.p  63 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAAESDAARAYDAAAQRFRG 111
                         78****9888.8*********......44**********88*************98 PP
2B397.49.1e-31195288184
                         EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                         f+k+ tpsdv+k++rlv+pk++ae+h          gg++ ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v 
  Brast01G176300.1.p 195 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqllpaagGGESGKGLLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVG 285
                         89*********************************98889999************************************************ PP

                         EEE CS
                  B3  82 Fkl 84 
                         F++
  Brast01G176300.1.p 286 FYR 288
                         *93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.22E-1263119No hitNo description
PfamPF008472.1E-763111IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1663119IPR016177DNA-binding domain
SMARTSM003809.9E-2764125IPR001471AP2/ERF domain
PROSITE profilePS5103219.79664119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-2064119IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-39187318IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-28193288No hitNo description
SuperFamilySSF1019362.35E-29193288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.465195307IPR003340B3 DNA binding domain
SMARTSM010191.6E-21195306IPR003340B3 DNA binding domain
PfamPF023624.6E-27195291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDSSSCLADE TTSGGASTDK LKALATAATA PLERMGSGAS AVLDAAEPGA EADSGRAGKL  60
PSSRYKGVVP QPNGRWGAQI YERHQRVWLG TFAAESDAAR AYDAAAQRFR GRDAVTNFRP  120
LSEDAAELRF LASRSKAEVV DMLRKHTYFD ELAQSSRAFA AAASVPNIAS RHDGHSSSLS  180
PSPAAAAAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLLPAAG GGESGKGLLL  240
NFEDAGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLRA GDVVGFYRAV AVAGEDGKLF  300
IDCKLRPDTN TAAAVDQSTP VAKPVRLFGV DLTVRPAPEQ GTAGCKRTTP RDFVEPPGPR  360
VPFKKQCVKL ALV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-511893072114B3 domain-containing transcription factor NGA1
5os9_B7e-511893072114B3 domain-containing transcription factor NGA1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G176300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569603.10.0AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX91e-176Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLI1HQL30.0I1HQL3_BRADI; Uncharacterized protein
STRINGBRADI2G47220.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-102related to ABI3/VP1 2