PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G186800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 323aa    MW: 35253.8 Da    PI: 10.3205
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G186800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.54.2e-1418104186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         +W++ e+ aL+e   ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s +p+++q
  Brast01G186800.1.p  18 CWSEGETSALVESWGSRYLELNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGAT------SPWPFYHQ 102
                         7*******************************************999999********************9998885......57****** PP

            trihelix  85 le 86 
                         l+
  Brast01G186800.1.p 103 LD 104
                         97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-2416104No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETSALVES WGSRYLELNR GSLRQPQWRE VADAVNSRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGATSPWPFY HQLDILVGPT LSAAAAAAAS  120
KKPSPPRSLP MMMRRRPSPS RSPSPPSPAP PMALPLPNYR RGSNLPSADL FHKAAAAAAA  180
AVDSESDDGY NNNNNNYDDD EGSQQSPSRS VSSRSGGNGA PALGGGGSSK RKRGGSGGFG  240
ELAMAMETFA EMYERMEAAK QRHAEEMERQ RIKFLKDLEL KRMQAFVDMQ LQLARVKHTK  300
NGASEMLMSL AALPFLSNPA YL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G186800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569548.11e-154trihelix transcription factor ASIL2
TrEMBLF2DI771e-156F2DI77_HORVV; Predicted protein
STRINGBRADI2G46320.11e-153(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.19e-29sequence-specific DNA binding transcription factors