PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G193000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 93aa    MW: 10321.2 Da    PI: 5.8698
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G193000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.7e-092165344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         W+ +E +l+ +a + +G g   +W +++r mg ++t+ +++ ++
  Brast01G193000.1.p 21 EWSRQENKLFEEALAYYGEGtpdRWLKVSRAMGGTKTADEVRRHY 65
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.3E-71871IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-122072IPR009057Homeodomain-like
PROSITE profilePS500906.5862069IPR017877Myb-like domain
CDDcd001671.63E-52165No hitNo description
PfamPF002491.1E-72165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-42167IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSSAGSRSS STRGGANAAS EWSRQENKLF EEALAYYGEG TPDRWLKVSR AMGGTKTADE  60
VRRHYEILED DFDLIRSGRL PFPQYNTQGA WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-221089277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G193000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739373e-65AK373937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3048G15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569502.17e-51protein RADIALIS-like 3
RefseqXP_024314815.17e-51protein RADIALIS-like 3
SwissprotQ6NNN08e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1HQ431e-49I1HQ43_BRADI; Uncharacterized protein
STRINGBRADI2G45780.13e-50(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-22RAD-like 1