PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G193100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 93aa    MW: 10255.1 Da    PI: 6.5256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G193100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-092165344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         W+ +E +l+ +a + +G g   +W++++r +g ++t+ +++ ++
  Brast01G193100.1.p 21 DWSRQENKLFEQALAYYGEGtpdRWHKVSRAIGGTKTADEVRRHY 65
                        6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2581773IPR017884SANT domain
SMARTSM007179.0E-81871IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-122076IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-62073IPR009057Homeodomain-like
PfamPF002495.0E-82165IPR001005SANT/Myb domain
CDDcd001676.15E-62265No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSSAGSRSS STRGGANAGS DWSRQENKLF EQALAYYGEG TPDRWHKVSR AIGGTKTADE  60
VRRHYEILFE DVDLIESGRL PFPQYNTQGA WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-261089277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G193100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935937e-66FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.18e-49protein RADIALIS-like 3
SwissprotQ6NNN04e-27RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1HQ422e-47I1HQ42_BRADI; Uncharacterized protein
STRINGBRADI2G45770.13e-48(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-26RAD-like 6