PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G193300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 248aa    MW: 25367 Da    PI: 7.2966
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G193300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20120154135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Brast01G193300.1.p 120 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 154
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.628114150IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-18114164IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-14114155No hitNo description
Gene3DG3DSA:3.30.50.102.9E-17118154IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.22E-13119151No hitNo description
PfamPF003205.6E-18120154IPR000679Zinc finger, GATA-type
PROSITE patternPS003440120145IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSMLFATAAP GDYHHHHYYS SSSSSKQCGG DDGGFNGSSY  60
GGGSVDCTLS LGTPSTRRAA EAAAGLPWET AVSGCNGNGN GIGAAPRADQ SANNTSARRC  120
ANCDTTSTPL WRNGPRGPKS LCNACGIRYK KEERRAAAAA VAPAAAGLAS DSGMEYAYGY  180
ARQQQHQQQQ WGCYGPAVAK AAASYGMFGD AAVAEVDGPC LPWGLGVMPS SPAFGSVREM  240
PSLFQYY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G193300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569499.11e-140GATA transcription factor 19
TrEMBLI1HQ381e-138I1HQ38_BRADI; Uncharacterized protein
STRINGBRADI2G45750.11e-139(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.16e-28GATA transcription factor 19