PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G196100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 319aa    MW: 34176.9 Da    PI: 5.8231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G196100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.31.1e-26131191259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Brast01G196100.1.p 131 EDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqSCSASKQVQRTDGDPLLFDVVYHGNHTCA 191
                         8***************************98999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-27117191IPR003657WRKY domain
SuperFamilySSF1182901.7E-24124191IPR003657WRKY domain
PROSITE profilePS5081120.53125193IPR003657WRKY domain
SMARTSM007743.3E-38130192IPR003657WRKY domain
PfamPF031067.8E-25131190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGGSSSSLD KYAERCALAA ELARVLDTVR QLEAHVGGPA DHDGGERCRA LVSSMRSSVD  60
RSIRIAMSCC VPGAPESPPS ADGSPRSGGA LDDDSRCRAA NAAGQSKKRK TLPRWNTQVR  120
VNSVQDVAPL EDGFSWRKYG QKDILGAKYP RAYFRCTHRH TQSCSASKQV QRTDGDPLLF  180
DVVYHGNHTC ALATATHCGT IQSPRLAENW QPQPAGQVQE QSPSPMVSVA VEFNGTEGDA  240
PQGLLEPAPF SFPSKPEPAA GAHAASNDFP EWTECHVSGA KNVPDVELTS SSANSPIGDM  300
EFMLQLAEAD FLDNSRYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20127190568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G196100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274011e-144KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566949.10.0probable WRKY transcription factor 53
TrEMBLI1HQ040.0I1HQ04_BRADI; Uncharacterized protein
STRINGBRADI2G45480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.17e-40WRKY family protein