PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G201200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 345aa    MW: 37302.9 Da    PI: 8.2539
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G201200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15270295126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ + +tG C+yGd+C+FaHg
  Brast01G201200.1.p 270 FKTELCNKWEETGACPYGDQCQFAHG 295
                         79***********************9 PP
2zf-CCCH20.11.1e-06308333126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykte Cr  + +  C+yG rC+F H+
  Brast01G201200.1.p 308 YKTEVCRMVLNGQVCPYGHRCHFRHS 333
                         9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.6E-19264302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10266301IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10269296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601269297IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12270295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8303335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-12303333IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014307335IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-6307334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MQEALVCPAN GDRLRSAFEL KAYAFGDQRL SSYLPSGGDD AAPALYRCAS PFSPSLGFSS  60
PSPLATSVSL SPSSSASLVD DGDYGAAAAD ATGHRLQLAR LALQCQEVAA RYELCLSHLA  120
EAVDEAAALR RENAELRAAN TDLVRRLALL GGKQQSAAAA IADDLRRFRG GDHKAAVERA  180
PETTKLAAML PKSISVRSNG YLKMNQQQPA PAPAAYNRKP RTSTTPTNPS SQRAYVDADG  240
GKKGGEEQKQ LQDKEQDAAA ELDVYNQGMF KTELCNKWEE TGACPYGDQC QFAHGVAELR  300
PVIRHPRYKT EVCRMVLNGQ VCPYGHRCHF RHSLTPAERL LRRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22270333467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G201200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605441e-131AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569444.20.0zinc finger CCCH domain-containing protein 9 isoform X1
SwissprotA2ZVY51e-119C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A2K2DDX30.0A0A2K2DDX3_BRADI; Uncharacterized protein
STRINGBRADI2G45090.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-49C3H family protein