PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G202300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 219aa    MW: 24388.8 Da    PI: 9.4503
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-1976129356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ +++keq + Lee F+ n+++s +++e LA kl+L  rqV vWFqNrRa+ k
  Brast01G202300.1.p  76 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTK 129
                         67789***********************************************98 PP
2HD-ZIP_I/II119.71.6e-3876163289
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+rL++eveeLr+
  Brast01G202300.1.p  76 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENRRLQREVEELRA 163
                         9*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-1856129IPR009057Homeodomain-like
SuperFamilySSF466896.68E-1965131IPR009057Homeodomain-like
PROSITE profilePS5007116.8671131IPR001356Homeobox domain
SMARTSM003896.6E-1673135IPR001356Homeobox domain
CDDcd000864.60E-1574132No hitNo description
PfamPF000464.2E-1676129IPR001356Homeobox domain
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PfamPF021835.0E-9131164IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-21131174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGATSPSGLE LTMAVPGLSS SSGSEGFVGC NNGNGNMRDL DMNQPASGGE EEEFLMGSVE  60
EDEEEVRGAG GPHRPKKLRL SKEQSRLLEE SFRLNHTLSP KQKEALAIKL KLRPRQVEVW  120
FQNRRARTKL KHTEMECEYL KRCFGSLTEE NRRLQREVEE LRAMRMAPPT VLSPHTRQPL  180
PASALTMCPR CERITAATGP RTVRLPSSFN PRRPSAAF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G202300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457270.0AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232077.11e-138homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-125HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-125HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLI1HPV21e-136I1HPV2_BRADI; Uncharacterized protein
STRINGBRADI2G45000.11e-137(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.13e-67homeobox-leucine zipper protein 17