PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G205400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ZF-HD

Protein Properties

Length: 249aa MW: 26951.2 Da PI: 9.2524

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G205400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	85.3	6.6e-27	59	110	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++++Y+eCl+NhAa++Ggh+vDGC+Efm++ + + l CaACgCHR+FHRr Brast01G205400.1.p 59 QQAQYHECLRNHAAATGGHVVDGCCEFMAA----SPDDPLACAACGCHRSFHRRGD 110 5789***********************9....4458*************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-17	60	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-22	61	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.5E-21	62	108	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.921	63	109	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	4.8E-27	163	233	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-17	165	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.6E-24	176	232	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MLHFDNHHTT AQGLACALFS IRAMEFREED DDAGVPPAPA SAANRAAPAG MHALESRRQQ 60 AQYHECLRNH AAATGGHVVD GCCEFMAASP DDPLACAACG CHRSFHRRGD TSPGRARLQP 120 LLAAANTRAP LLLPPAPAGN SKQQRLAPFP YGLVAPSAGT TTTESSSEER RGAPRRRSRT 180 TFTREQKEQM LAFAERVGWR MQRQDEASVE QFCAEAGVRR QALKVWMHNN KQSGSSAGRR 240 QLQKPSGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-28	176	238	18	80	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G205400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232067.1	1e-99	zinc-finger homeodomain protein 5
Swissprot	A2WSZ6	1e-56	ZHD5_ORYSI; Zinc-finger homeodomain protein 5
TrEMBL	I1HPS0	3e-98	I1HPS0_BRADI; Uncharacterized protein
STRING	BRADI2G44540.1	4e-99	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	8e-34	homeobox protein 30

Link Out ? help Back to Top
Phytozome	Brast01G205400.1.p