PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G208400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 298aa    MW: 31705.3 Da    PI: 5.5794
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G208400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.38.6e-25106166259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg +WrKYGqK++++se+p+sY+rCt++   +C++ ++v+r+++dp+ +++tY g+H+++
  Brast01G208400.1.p 106 EDGQSWRKYGQKDIQNSEHPKSYFRCTHKydqKCSALRQVQRCDQDPESFVVTYIGQHTCQ 166
                         8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-2599168IPR003657WRKY domain
PROSITE profilePS5081121.149100168IPR003657WRKY domain
SuperFamilySSF1182902.48E-23104168IPR003657WRKY domain
SMARTSM007741.6E-34105167IPR003657WRKY domain
PfamPF031061.4E-22106166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MSMTMEQPTP HELLMGELTK GKDLAARLQG LLGHSPEAGL IVDQILHAFS RAIDAAKPAT  60
IGVVGPEVQS EVTCAGKRKA AAAAARRGTS RRRQSSGFSK VVKNIEDGQS WRKYGQKDIQ  120
NSEHPKSYFR CTHKYDQKCS ALRQVQRCDQ DPESFVVTYI GQHTCQDPHD DMAAPPRFIT  180
HQTAAAGDDG LRAGTRLICF APNAGPASTT TSVTTNQTGI GMDGAALGLP ILKVEGGDQE  240
EVRSCLTPGS SAVHSTAAAA GPDQGDVTSA PQLYEDGADL GEFFGLEDIF DLYETTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-3499166269OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G208400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566912.11e-160probable WRKY transcription factor 70
TrEMBLI1HPN11e-159I1HPN1_BRADI; Uncharacterized protein
STRINGBRADI2G44270.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76563549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.16e-26WRKY DNA-binding protein 46