PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G210100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

WRKY

Protein Properties

Length: 339aa MW: 36928.1 Da PI: 8.3288

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G210100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.3	2.8e-32	193	250	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+ Brast01G210100.1.p 193 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 250 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-33	179	252	IPR003657	WRKY domain
SuperFamily	SSF118290	6.67E-29	185	252	IPR003657	WRKY domain
PROSITE profile	PS50811	31.066	187	252	IPR003657	WRKY domain
SMART	SM00774	1.6E-37	192	251	IPR003657	WRKY domain
Pfam	PF03106	1.9E-25	193	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MSSGGGGGGG DRHGHGLYHL GSDYELSSND LESFFFSQPA AGDIGGGVGA EEIAPYASIT 60 DYLQGILDPS TGIARHLDVP CSSPVKHELS VEARSHDLDS QGAGSAAGAL LTPNSSLSFS 120 SSGGDDGEGK SRRCKKQQGR AKKAEEDQGG KDLQDDGENS KKGNSKAKKQ KAEKRQRLPR 180 VSFLTKSEVD HLEDGYRWRK YGQKAVKNSP YPRSYYRCTT PKCGVKKRVE RSYQDPSTVI 240 TTYEGQHTHH SPASLRGSAA HLFMPPPQHL GLMAPPLFRP DLMSMMQHMQ YSNPNNMYMP 300 TSIPPHHHPM ATPPLQQHHF TDYALLQDLF PSTMPNNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-29	185	253	10	78	Probable WRKY transcription factor 4
2lex_A	2e-29	185	253	10	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00440	DAP	Transfer from AT4G18170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G210100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU665451	1e-130	EU665451.1 Triticum aestivum WRKY36 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566905.1	0.0	probable WRKY transcription factor 71
Swissprot	Q8VWJ2	8e-49	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	I1HPL1	0.0	I1HPL1_BRADI; Uncharacterized protein
STRING	BRADI2G44090.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-48	WRKY DNA-binding protein 71

Link Out ? help Back to Top
Phytozome	Brast01G210100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]