PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G210800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 317aa    MW: 34350.9 Da    PI: 8.0642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G210800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.7e-27159217259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YY+C+s  gC+++k vers   p v++itY  eH h+
  Brast01G210800.1.p 159 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKMVERSPAKPGVLVITYMAEHCHP 217
                         799***********************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081130.056153219IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-27154219IPR003657WRKY domain
SuperFamilySSF1182902.22E-24156219IPR003657WRKY domain
SMARTSM007743.1E-32158218IPR003657WRKY domain
PfamPF031062.2E-22160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MCARPLLLLL RMEHLNDWDL QAVVRSCSSS GGVSSSQYPD DRAPPPEPKE MARGSARPAA  60
KDASALYDLE YLDLDRKPFL LSTTSPQAWA NPDEGRREVM ISFPAAAAST STSTSAAHTR  120
VPPGRKPGVR STPRPKRSKK SQLKKVVCEV PVADGGVSSD LWAWRKYGQK PIKGSPYPRG  180
YYKCSSMKGC MARKMVERSP AKPGVLVITY MAEHCHPVPT QINALAGTTR HKSSTPAEDH  240
PTASPKSQGN KAGGGNAHEA AKCKLEDDET SAMAMADDEN EFWPTDMALD DLLAPMDGDF  300
DHVFEEDGVL GRRLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20140220280Disease resistance protein RRS1
5w3x_D1e-20140220280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G210800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566901.11e-168WRKY transcription factor 22
TrEMBLI1HPK51e-167I1HPK5_BRADI; Uncharacterized protein
STRINGBRADI2G44035.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-38WRKY DNA-binding protein 27