PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G216200.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 348aa    MW: 37920.2 Da    PI: 8.4848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G216200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56e-102349127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+ff++t  C++ ++CkF+H++
  Brast01G216200.2.p 23 PGEPDCPFFMKTSRCRFASKCKFNHPK 49
                        5789*********************96 PP
2zf-CCCH246.6e-087898425
                        ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                        e+C+ff + G Ck+G +CkF+H
  Brast01G216200.2.p 78 EPCPFFPK-GKCKFGTNCKFSH 98
                        89******.************* PP
3zf-CCCH33.19.3e-11151177127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+ +tG C yG++C+F+H++
  Brast01G216200.2.p 151 PGEVDCSFYIKTGSCMYGSTCRFNHPE 177
                         57899********************96 PP
4zf-CCCH37.53.8e-12238262226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++  C+f+++tG+Ck+ ++CkF+H+
  Brast01G216200.2.p 238 GETVCDFYMKTGFCKFSEKCKFHHP 262
                         6789********************9 PP
5zf-CCCH43.26.5e-14292315427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C+f+++tGtCk+G +CkF H+p
  Brast01G216200.2.p 292 EVCSFYMKTGTCKFGVQCKFDHPP 315
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5112250IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-52249IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-72449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-52752IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.87375101IPR000571Zinc finger, CCCH-type
SMARTSM003560.001175100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-57699IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-578100IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-57898IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192150178IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5150177IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7152177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6154178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4156177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7236264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371236264IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7236263IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10238262IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5241262IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403288316IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7288315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6290316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5292313IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-11292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MLMSARGDPR KAPKAEESYP ERPGEPDCPF FMKTSRCRFA SKCKFNHPKE KVNATAAGTG  60
NKGSLISESS ISPVKPSEPC PFFPKGKCKF GTNCKFSHAK DIEVPSSGNE SKSTATVEAA  120
GHNSAANDSV SAKKLTPVAQ EHNSKGMPIR PGEVDCSFYI KTGSCMYGST CRFNHPERHH  180
PVLDFPLAAP LGQSILPTSS VVPVEMLNRA TNFLPNFDFH ATHVPIEPEP IAYPQRPGET  240
VCDFYMKTGF CKFSEKCKFH HPVDRSAPDP VATRQKSVTL TLAGLPRRED AEVCSFYMKT  300
GTCKFGVQCK FDHPPPQEAI AKVSKQGAAE EKGEKKEAVG LSYVLEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G216200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232025.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ61e-150C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
TrEMBLA0A0Q3R5J40.0A0A0Q3R5J4_BRADI; Uncharacterized protein
STRINGBRADI2G43600.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-93floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]