PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G216200.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 411aa    MW: 45146.2 Da    PI: 8.1785
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G216200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.5e-103762227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C f++rt tC +G+ CkF H++
  Brast01G216200.3.p 37 GEKDCAFYMRTRTCMFGEDCKFDHPQ 62
                        7889********************97 PP
2zf-CCCH30.37.4e-1086112127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+ff++t  C++ ++CkF+H++
  Brast01G216200.3.p  86 PGEPDCPFFMKTSRCRFASKCKFNHPK 112
                         5789*********************96 PP
3zf-CCCH23.88.1e-08141161425
                         ---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                         e+C+ff + G Ck+G +CkF+H
  Brast01G216200.3.p 141 EPCPFFPK-GKCKFGTNCKFSH 161
                         89******.************* PP
4zf-CCCH32.81.2e-10214240127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++ C+f+ +tG C yG++C+F+H++
  Brast01G216200.3.p 214 PGEVDCSFYIKTGSCMYGSTCRFNHPE 240
                         57899********************96 PP
5zf-CCCH37.34.7e-12301325226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         ++  C+f+++tG+Ck+ ++CkF+H+
  Brast01G216200.3.p 301 GETVCDFYMKTGFCKFSEKCKFHHP 325
                         6789********************9 PP
6zf-CCCH42.98e-14355378427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         e C+f+++tGtCk+G +CkF H+p
  Brast01G216200.3.p 355 EVCSFYMKTGTCKFGVQCKFDHPP 378
                         78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00483562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9533563IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53662IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-73762IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.51185113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-687112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-590115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873138164IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5139162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5141163IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5141161IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5213240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192213241IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7215240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4219240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-7299327IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371299327IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5304325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403351379IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6353379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5355376IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-11355378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGSHSTMGQS EALYSSNTMA KRPRVESSLP IYPQRPGEKD CAFYMRTRTC MFGEDCKFDH  60
PQWVPEGGIP NWKEAPKAEE SYPERPGEPD CPFFMKTSRC RFASKCKFNH PKEKVNATAA  120
GTGNKGSLIS ESSISPVKPS EPCPFFPKGK CKFGTNCKFS HAKDIEVPSS GNESKSTATV  180
EAAGHNSAAN DSVSAKKLTP VAQEHNSKGM PIRPGEVDCS FYIKTGSCMY GSTCRFNHPE  240
RHHPVLDFPL AAPLGQSILP TSSVVPVEML NRATNFLPNF DFHATHVPIE PEPIAYPQRP  300
GETVCDFYMK TGFCKFSEKC KFHHPVDRSA PDPVATRQKS VTLTLAGLPR REDAEVCSFY  360
MKTGTCKFGV QCKFDHPPPQ EAIAKVSKQG AAEEKGEKKE AVGLSYVLEN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G216200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569363.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
TrEMBLA0A0Q3R5J40.0A0A0Q3R5J4_BRADI; Uncharacterized protein
STRINGBRADI2G43600.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-136floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]