PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G224400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB_related

Protein Properties

Length: 148aa MW: 16540 Da PI: 11.4498

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G224400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.7e-13	11	54	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l ++ ++ ++W+++ar m+ gR+ k c++rw+ + Brast01G224400.1.p 11 GWTAEEDARLEKLARENRFRHWHRVARQMP-GRSHKLCRDRWRGH 54 6***************************.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.274	5	59	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-13	7	69	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-8	8	57	IPR001005	SANT/Myb domain
Pfam	PF13921	1.2E-11	12	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-16	12	72	IPR009057	Homeodomain-like
CDD	cd00167	3.96E-10	12	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MLIVRLRLRR GWTAEEDARL EKLARENRFR HWHRVARQMP GRSHKLCRDR WRGHLARDVY 60 GRAFTAADDA ELARHARTSR DLKRRWRELL RKNGADHKMA EASASSTLEC PLADALAAGL 120 SSCSLGGGPA VDPRLGSLAL GFACMAV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G224400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024314259.1	5e-79	transcription factor MYB73-like
TrEMBL	A0A0Q3J7Z2	1e-77	A0A0Q3J7Z2_BRADI; Uncharacterized protein
STRING	LPERR07G10060.1	1e-43	(Leersia perrieri)
STRING	LPERR07G10290.1	1e-43	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12569	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-13	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Brast01G224400.1.p