PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G239900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 671aa    MW: 71419.2 Da    PI: 5.2812
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G239900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-06455477225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k ++C +far G C  Gd C++ H
  Brast01G239900.1.p 455 KSKPCTHFAR-GSCLKGDDCPYDH 477
                         6789******.************* PP
2zf-CCCH20.39.8e-07483504526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++f+ +G C +Gd+CkF+H+
  Brast01G239900.1.p 483 PCHNFLGNGMCLRGDKCKFSHV 504
                         7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.709424451IPR000571Zinc finger, CCCH-type
SMARTSM003560.51425450IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5425449IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4452478IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281453480IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5453479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5455478IPR000571Zinc finger, CCCH-type
SMARTSM003560.28481505IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6482513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295483506IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MENALAPAGP PDPLAAGSAA PTTLLLTRRR SHLDSASYRT LSRLFSHFLH LSPSQKAASA  60
HPGVEPAAAN PIGDASPQGA SAPPKDAEFE QGKDIEEEVA AASTSGVETP AHVVAEAAAG  120
DPIADLDMAS QESAGHEVAG VELVEGLEDM VAEGITCHKT PALVGELGGE AELMGTDELL  180
RSMEASLEGE IEESAELAVA NDDEHLLLDT MMTNLSGLIG DASGGTMPMQ NYGVSRGEPQ  240
NHGKIAEGVK ELGAGIEEST PVGNSDHQTG GFEEGEIEGD MQTLDADESG DSELEAADDE  300
KLEEDFATRG SGENESSDHG IRCLNSLSMP GIKGSGDLVL NKEGDIKADA QMHVPRAQAV  360
SYDEVVEWNE TPLHDAEAPR PGKRKRIFTE ERKAKKTKNK RVKRALQREA DGVKRLKLAP  420
IIKPKVVRYC HFYLHGKCQQ GNVCKFSHDT TPLTKSKPCT HFARGSCLKG DDCPYDHELS  480
KYPCHNFLGN GMCLRGDKCK FSHVAPTADG SSITDAKKSE KPTSREQNSS QKEPVASAPT  540
KHYSILRTLG SISKNAQKAS AHMPKGVQFL PFSKGRSDSS ILHQDALPTG NFGGPQAAEG  600
DKYAQPNRHR SAARSNEKNS SKEASSHLLS ERKKDSLSAD STAVLGSVST QHEVSEASRI  660
LQEFLFGTGN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G239900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315193.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLI1HNR50.0I1HNR5_BRADI; Uncharacterized protein
STRINGBRADI2G41540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-06C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]