PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G243500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 393aa    MW: 42754.4 Da    PI: 6.0559
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G243500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.51.2e-27237286352
              RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ++i +e+l+kyF++pi++AA+eL+v+lTvLK++CR++G++RWPhRk+ksl
  Brast01G243500.1.p 237 EQIGFEELRKYFYMPITKAARELNVGLTVLKKRCRELGVARWPHRKMKSL 286
                         689*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.746213306IPR003035RWP-RK domain
PfamPF020426.0E-22239286IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MQRYYGGDAD WYFHDPLAAY PGPLPLSSSS SSSPPSGLFT SDDSCLSMAA APFPGQVEDC  60
SSALMLREEA DMTGYLPMSM IPGPAAGHDL LYPDNNVLPP FPEDLTTAGL DLDDALLMLQ  120
PLGDIDLEAF GDMDQVKPEP KTDLDMAIIV PPALDQNLGP RPQQATPMEN QLQQNDNAAR  180
HGDSSSIAVA RPGYGAAGAV VGTGHADPQN QQQRAAPQRA RRISREGSNA TGGRSLEQIG  240
FEELRKYFYM PITKAARELN VGLTVLKKRC RELGVARWPH RKMKSLRSLI LNIQEMGQGG  300
GVLPPAVQRE LEALDRACAL MEENPAIELT EQTKKLRQAC FKENYKRRRA AAVNVLDGCY  360
SGFGGRHPQQ LPPMPLQRIS PHSHSAAFFG RH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G243500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039336e-51AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06.
GenBankAP0042586e-51AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24.
GenBankAP0149576e-51AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-51CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233419.10.0uncharacterized protein LOC104583278
TrEMBLA0A0Q3GCN40.0A0A0Q3GCN4_BRADI; Uncharacterized protein
STRINGBRADI2G40920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.15e-36RWP-RK domain-containing protein