PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G252100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 309aa    MW: 34083.4 Da    PI: 5.4756
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G252100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.58e-12136215190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn Y+ e+GF vr +k + +  +g+  +++ vC + gk+ +e+++         +  ++C+  +++ +++d++w++ + ++ HnH+l+
  Brast01G252100.1.p 136 NFYNLYSWEIGFGVRYAKCRLN-IHGKKCMQEIVCVCAGKPLTENSR---------SACCSCTVLIRLLRSEDKEWYICEHRERHNHPLF 215
                         6*****************9998.77778999*********9997666.........7889999999999999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.2E-8136215IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPAPASTGGG DELSPAAVPA TAVADPSGIN LPGSEEGGPD SVQMDDEPAN GCVGSEVEGD  60
SLVGNSSSAR EEVMKINSEG YTRRIRIGAS PEERELNPNR TSALEASIKN YAERKSDIVV  120
NPVVGTSFDS LDDAYNFYNL YSWEIGFGVR YAKCRLNIHG KKCMQEIVCV CAGKPLTENS  180
RSACCSCTVL IRLLRSEDKE WYICEHRERH NHPLFKACDE KLQWKSHKNI DGDMKQLREN  240
NISLGKVYSI IGSFFGSMEH IPFTKMSLKT LCGKISREQS DNDVVKTMDV FSKMLEANPD  300
FKYSVLFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G252100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753620.11e-133putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024313565.11e-133putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0Q3H2T01e-131A0A0Q3H2T0_BRADI; Uncharacterized protein
TrEMBLA0A0Q3H2T41e-131A0A0Q3H2T4_BRADI; Uncharacterized protein
STRINGBRADI1G32950.11e-132(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.17e-10FAR1-related sequence 6