PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G271100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 133aa    MW: 14426.2 Da    PI: 8.6717
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G271100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.8e-192155135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        C+ C+tt+Tp+WR gp g ++LCnaCG++yrkk++
  Brast01G271100.1.p 21 CVECRTTTTPMWRGGPTGRRSLCNACGIRYRKKRR 55
                        ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.8611551IPR000679Zinc finger, GATA-type
SMARTSM004013.9E-151565IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-131855No hitNo description
Gene3DG3DSA:3.30.50.106.3E-161956IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.52E-132056No hitNo description
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
PfamPF003201.4E-162155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MGSSDRKVDG IGVVEEGRRS CVECRTTTTP MWRGGPTGRR SLCNACGIRY RKKRRQDLGL  60
DQKEPPPQQQ QHNGEEAIIT AEVKDSTSNS NSSSGSSNLQ IVQERKLLMG VEEAALLLMT  120
LSSPPPSTFL HG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G271100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962265e-49FP096226.1 Phyllostachys edulis cDNA clone: bphyst038a02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567660.13e-77GATA transcription factor 23
TrEMBLI1HF657e-76I1HF65_BRADI; Uncharacterized protein
STRINGBRADI2G12590.11e-76(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-18GATA transcription factor 23