PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G272500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 119aa    MW: 13635.2 Da    PI: 12.4032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G272500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-06521011055
                         HHHHHHHHHHHHHHHCTSCCC......TTS-STCH.HHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkas...kapskKlsKa.eiLekAveYIksLq 55 
                         rrR+d i+ ++  Lr+l+P as   + ++ + s   e L +  +YI  Lq
  Brast01G272500.1.p  52 RRRVDVIRRKIRALRTLVPRASngeQDRQDRHSRLdELLLHSADYILRLQ 101
                         99******************998995555555555268999*****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-651114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-552111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAARAASSCC RVAAARRFLA RKKKALEAGT RKKLAGVAKQ KQGMPRRARS RRRRVDVIRR  60
KIRALRTLVP RASNGEQDRQ DRHSRLDELL LHSADYILRL QMQVRVMQLM VHVLNPKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G272500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701703.11e-22uncharacterized protein LOC105914476
TrEMBLI1HF555e-56I1HF55_BRADI; Uncharacterized protein
STRINGBRADI2G12490.18e-57(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126