PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G280000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 195aa    MW: 21188.9 Da    PI: 7.2898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G280000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-194999256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                        +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Brast01G280000.2.p 49 RYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 99
                        7********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.64549106IPR001471AP2/ERF domain
SMARTSM003804.0E-3649112IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2249107IPR016177DNA-binding domain
CDDcd000181.07E-1649107No hitNo description
Gene3DG3DSA:3.30.730.107.2E-3249107IPR001471AP2/ERF domain
PfamPF008478.1E-134998IPR001471AP2/ERF domain
PRINTSPR003673.5E-115061IPR001471AP2/ERF domain
PRINTSPR003673.5E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MCGGAIIYDC VPAPRRVSAA DFWPDADDSD AHSTAPHKAP RAKRERRNRY RGIRQRPWGK  60
WAAEIRDPVK GVRVWLGTYP TAEAAARAYD RAARRIRGAK AKVNFPNEEL LLASSPATAA  120
AAPPAVLSSL KKEEDAEFRC VACSGEAKEL SEELMAYESY MSFLGVPYMQ GGDVAAPAAE  180
EAPAPAALWS FEDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2250106663ATERF1
3gcc_A3e-2250106663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G280000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944081e-118FP094408.1 Phyllostachys edulis cDNA clone: bphylf025f05, full insert sequence.
GenBankFP1003901e-118FP100390.1 Phyllostachys edulis cDNA clone: bphylf045j15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567604.13e-94ethylene-responsive transcription factor ERF071
TrEMBLI1HEY16e-93I1HEY1_BRADI; Uncharacterized protein
STRINGBRADI2G11890.11e-93(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-27ERF family protein