PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G288400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 461aa    MW: 48000.9 Da    PI: 8.4903
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G288400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30186244259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  Brast01G288400.2.p 186 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 244
                         7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33170246IPR003657WRKY domain
SuperFamilySSF1182901.03E-27178246IPR003657WRKY domain
PROSITE profilePS5081129.471180246IPR003657WRKY domain
SMARTSM007742.1E-36185245IPR003657WRKY domain
PfamPF031062.1E-26187244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MCSICWLTRT PTCLCGAQME AAATVQGELR RVVEENLRLR GMLEELTRSY GALYHQLLQV  60
THQQQHPHRH TDLAMNNRSP LTQTHLTAAN TSATQQFLEP RPRAPISTTM GTAQQDDAAV  120
EYDSGTASSP SLSGAGNGGG KRRTVQDDAA AAPGTRESSE QASPEQPPCR KPRVSVRARS  180
EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMATGCPVR KQVQRCAEDK TVLITTYEGN  240
HNHQLPPAAT TMANTTSAAA AMLLSGPATS RDGPIGPLLG HPTAASLFHP AHHQYSFPYA  300
SSMATLSASA PFPTITLDLT QPPPSAGLHR PPPPAASMPL PPQLAMYLQQ RATMLPPGLS  360
AGAQSVMDTV TAAIAADPNF STALAAAISS VMARSEAPHH QDQPSTTATA TPRGGVSAAG  420
DGTGAALAAP TVSATDGARA ASGGGGSPRL ATQSCTTSTA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-23176246877Probable WRKY transcription factor 4
2lex_A6e-23176246877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G288400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432751e-49AK243275.1 Oryza sativa Japonica Group cDNA, clone: J100050A06, full insert sequence.
GenBankAP0024801e-49AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05.
GenBankAP0149571e-49AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-49CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233067.10.0probable WRKY transcription factor 47
TrEMBLA0A0Q3JZT40.0A0A0Q3JZT4_BRADI; Uncharacterized protein
STRINGBRADI2G11170.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-64WRKY family protein