PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G288800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 241aa    MW: 26948.1 Da    PI: 8.3419
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G288800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.15.4e-19546142
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        kri n+  r++tf +Rrng+ KKA+EL +LC+++++vi++++
  Brast01G288800.1.p  5 KRIPNDVARHTTFRNRRNGLVKKASELATLCNVNACVIVYGE 46
                        79**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-17156IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.25146IPR002100Transcription factor, MADS-box
CDDcd002666.27E-22278No hitNo description
SuperFamilySSF554556.93E-20590IPR002100Transcription factor, MADS-box
PfamPF003193.5E-17646IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MARKKRIPND VARHTTFRNR RNGLVKKASE LATLCNVNAC VIVYGEGEAQ PEVWPSVAQA  60
VPILHRYKAM PDIAQCKKTV TQEGLLRQRM DKLREQIQKA RRENHERHTA SLVHKVMLGR  120
LPRLEGLTVE EVTNVGWMVQ MNLKSLVDCI VFLQALADLE ARTNPAPSLM YEQQAPHQET  180
LLDMTLEARW WRWRRLVVEA PELQAETELE EMQTPVLVEA LDAGGVTGAS IVGGVAGGSS  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G288800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230798.31e-107agamous-like MADS-box protein AGL80
TrEMBLA0A0Q3G0641e-106A0A0Q3G064_BRADI; Uncharacterized protein
STRINGGRMZM5G839969_P019e-59(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-24AGAMOUS-like 80