PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast01G304500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 95aa    MW: 10194.7 Da    PI: 11.4953
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast01G304500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.32e-121375168
                 NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkky 68
                        lp GfrF Ptdeel    L++k+ + +l+ +++i+ +d+ +++P dLp    + + + +fFs+   + 
  Brast01G304500.1.p 13 LPNGFRFMPTDEELT---LRNKALSFPLPNDNIIPVADVARIHPADLPGD--EAQGDRFFFSRPVLRC 75
                        699************...************999***************33..3445789999876555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-14680IPR003441NAC domain
PROSITE profilePS5100513.1151394IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MAMPAAGGGP LGLPNGFRFM PTDEELTLRN KALSFPLPND NIIPVADVAR IHPADLPGDE  60
AQGDRFFFSR PVLRCGRRAR GAAAETRRPR SRPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast01G304500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310836.13e-31NAC domain-containing protein 83-like
TrEMBLA0A0Q3EJB16e-30A0A0Q3EJB1_BRADI; Uncharacterized protein
STRINGBRADI1G48580.13e-29(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.21e-10NAC domain containing protein 41