PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast01G305800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Dof

Protein Properties

Length: 540aa MW: 58406 Da PI: 4.7583

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast01G305800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	160	219	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Brast01G305800.1.p 160 PDKIIPCPRCNSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKNS 219 7899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-31	157	217	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.0E-32	162	218	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	164	218	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	166	202	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MSDQMDSGIK LFGRVIPLAP EAASGPPEAD AAAGSDHPPP PPELQTAAPA GEAEEEAHKD 60 QHKETEDKED SEMKVDVPPE KENRGMKGDA PGEKEDNEME VDAPQVNENA EPDSSSTLDH 120 KKDTQDQINN AEDKAASDPK ELNEKTANEE SDQDKVLKKP DKIIPCPRCN SMDTKFCYYN 180 NYNINQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKSKNSS LHYRQLLMAP DCMMGSRVDI 240 SNTVNPEVLA SLPTTPTKST SRNETVLKFG PEVPLCESMA SVLNMEEQNV INAGSVPIGE 300 AREVNSCASS MTSHNGLPEN TVHVDKNGAP VYCGGVGPMP PYYLGAPFMY PWSIGWNNLP 360 VMVPGGSMSE SASPSESCST SSAPWMNSPM MPGSRLPAPA FPYPLVPPTL WGCLPSWPWN 420 APWIGTNGCI SPSTSSNSSC SGNGSPTLGK HSRDSNPLKD DKEEKSLWVP KTLRIDDPDE 480 AAKSSIWATL GIKPGDPGVF KPFQFKSENK GQTTDVRPAR VLQANPAAFS RSQSFQESS*

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MSDQMDSGIK LFGRVIPLAP EAASGPPEAD AAAGSDHPPP PPELQTAAPA GEAEEEAHKD  60
QHKETEDKED SEMKVDVPPE KENRGMKGDA PGEKEDNEME VDAPQVNENA EPDSSSTLDH  120
KKDTQDQINN AEDKAASDPK ELNEKTANEE SDQDKVLKKP DKIIPCPRCN SMDTKFCYYN  180
NYNINQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKSKNSS LHYRQLLMAP DCMMGSRVDI  240
SNTVNPEVLA SLPTTPTKST SRNETVLKFG PEVPLCESMA SVLNMEEQNV INAGSVPIGE  300
AREVNSCASS MTSHNGLPEN TVHVDKNGAP VYCGGVGPMP PYYLGAPFMY PWSIGWNNLP  360
VMVPGGSMSE SASPSESCST SSAPWMNSPM MPGSRLPAPA FPYPLVPPTL WGCLPSWPWN  420
APWIGTNGCI SPSTSSNSSC SGNGSPTLGK HSRDSNPLKD DKEEKSLWVP KTLRIDDPDE  480
AAKSSIWATL GIKPGDPGVF KPFQFKSENK GQTTDVRPAR VLQANPAAFS RSQSFQESS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast01G305800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003565622.2	0.0	cyclic dof factor 2
TrEMBL	A0A0Q3JZ27	0.0	A0A0Q3JZ27_BRADI; Uncharacterized protein
STRING	BRADI2G09720.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-47	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Brast01G305800.1.p